There are two approaches to this task. First solution is to use Edit Table feature of SQL Server to MySQL converter. This feature can be accessed by double click on the corresponding table name in "Selected tables" list.
Another solution is to convert contents of the table as result of SELECT-query with custom name. Click "Add Query" button on "Select tables" wizard page and compose simple query as follows:
SELECT * FROM <original table name>
Then store query with the required name. This feature can be accessed from "Step 5 of 7" page of MS SQL to MySQL conversion wizard.
See Using Queries article for the further information.
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